JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOMEZ_chr14_23267422_23291132	0/0	t0047	3334	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOOK1_chr1_59809949_59881322	0/0	t0001	3526	34	7	10	9	2	6	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0002	3524	30	1	7	19	1	2	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/1	t0003	3528	18	3	1	9	3	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0004	3532	16	0	9	6	1	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0005	3530	14	4	2	5	1	2	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0006	3532	12	6	3	3	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0007	3530	11	4	0	5	1	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0008	3526	9	0	2	7	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0009	3530	6	6	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0010	3534	6	0	1	3	1	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0011	3528	5	5	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0012	3530	5	1	0	3	1	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0013	3518	4	4	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0014	3526	4	4	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0015	3532	4	0	0	4	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0016	3522	3	1	0	2	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0017	3526	3	1	0	0	0	2	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0018	3528	3	2	0	0	0	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0019	3530	3	0	0	3	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0020	3532	3	0	1	0	0	2	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0021	3534	3	0	1	0	0	2	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0022	3532	3	0	0	3	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0023	3536	3	0	0	3	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0024	3520	2	2	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0025	3520	2	1	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0026	3524	2	0	1	0	1	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0027	3526	2	2	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0028	3528	2	2	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0029	3532	2	0	0	2	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0030	3534	2	0	0	2	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0031	3536	2	1	0	0	0	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0032	3528	2	0	0	2	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0033	3518	2	2	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0034	3528	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0035	3516	1	0	0	0	0	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0036	3518	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0037	3520	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0038	3522	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0039	3522	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0040	3524	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0041	3524	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0042	3526	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0043	3526	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0044	3528	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0045	3528	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0046	3530	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0047	3530	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0048	3530	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0049	3532	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322