JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOOK1_chr1_59809949_59881322	0/0	t0050	3532	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0051	3534	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0052	3534	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0053	3536	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0054	3536	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0055	3536	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0056	3539	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0057	3518	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0058	3530	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0059	3530	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	1/0	t0060	3527	1	0	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0061	3522	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0062	3520	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	t0063	3532	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK2_chr19_12758003_12780552	1/1	t0001	383	346	89	72	132	13	38	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	t0002	383	7	7	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	t0003	383	6	0	0	5	1	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	t0004	383	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK3_chr8_42891978_43035535	0/0	t0001	12200	27	13	4	6	1	3	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/1	t0002	12201	14	4	2	6	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0003	12185	9	9	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0004	12197	7	4	0	3	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0005	12198	5	2	0	3	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0006	12201	5	1	3	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0007	12184	4	4	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	1/0	t0008	12192	3	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0009	12204	3	1	0	1	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0010	12194	3	0	2	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0011	12197	3	3	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0012	12198	2	0	0	2	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0013	12202	2	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0014	12202	2	0	0	0	0	2	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0015	12197	2	1	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0016	12197	2	0	2	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0017	12197	2	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0018	12205	2	0	2	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0019	12196	2	1	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0020	12186	2	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0021	12189	2	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0022	12196	2	2	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0023	12200	1	0	0	0	1	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0024	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0025	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0026	12201	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0027	12216	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0028	12198	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0029	12196	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0030	12202	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0031	12206	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0032	12199	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535