Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKEF1_chr20_10029987_10063303	0/0	t0054	3075	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0055	3107	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0056	3103	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0057	3111	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0058	3115	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0059	3103	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0060	3115	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0061	3115	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0062	3091	1	0	0	0	1	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0063	3099	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0064	3115	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0065	3115	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0066	3107	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0067	3079	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0068	3083	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0069	3087	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0070	3083	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0071	3083	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0072	3099	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0073	3083	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0074	3080	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKFN1_chr17_56148475_56522016	0/1	t0001	5874	31	4	5	14	1	6	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	1/0	t0002	5874	11	6	1	0	1	2	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0003	5874	8	7	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0004	5874	7	7	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0005	5876	7	6	0	0	0	1	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0006	5876	6	6	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0007	5876	4	4	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0008	5876	4	0	1	2	0	1	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0009	5872	3	2	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0010	5874	3	3	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0011	5876	3	3	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0012	5872	2	1	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0013	5874	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0014	5872	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0015	5878	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0016	5870	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0017	5876	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0018	5872	2	0	2	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0019	5872	1	0	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0020	5872	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0021	5874	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0022	5876	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0023	5874	1	0	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0024	5878	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0025	5874	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0026	5878	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0027	5874	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0028	5872	1	0	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	t0029	5874	1	0	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016