JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOOK3_chr8_42891978_43035535	0/0	t0033	12198	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0034	12198	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0035	12193	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0036	12197	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0037	12197	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0038	12196	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0039	12203	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0040	12198	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0041	12201	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0042	12205	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0043	12201	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0044	12200	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0045	12198	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0046	12197	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0047	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0048	12197	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0049	12192	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0050	12192	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0051	12196	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0052	12191	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0053	12200	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0054	12200	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0055	12200	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0056	12204	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0057	12208	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0058	12197	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0059	12202	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0060	12204	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0061	12199	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0062	12203	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0063	12200	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0064	12185	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0065	12189	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0066	12181	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0067	12190	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0068	12184	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0069	12184	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0070	12184	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0071	12200	1	0	0	0	0	1	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0072	12198	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0073	12198	1	0	1	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0074	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0075	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0076	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0077	12186	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0078	12201	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	t0079	12197	1	1	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOPX_chr4_56642998_56686296	1/1	t0001	848	359	77	64	165	13	38	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0002	848	5	4	1	0	0	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0003	848	5	0	3	0	2	0	copy fasta	HOPX	chr4	56642998	56686296