JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOPX_chr4_56642998_56686296	0/0	t0004	848	2	0	0	2	0	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0005	848	1	0	1	0	0	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0006	848	1	1	0	0	0	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0007	848	1	0	0	0	1	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0008	848	1	0	0	1	0	0	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	t0009	848	1	0	1	0	0	0	copy fasta	HOPX	chr4	56642998	56686296
HORMAD1_chr1_150693060_150725895	1/1	t0001	720	363	93	48	160	16	44	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	t0002	720	27	0	8	19	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	t0003	720	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	t0004	720	1	0	0	1	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD2_chr22_30075464_30182075	1/1	t0001	974	299	81	62	120	11	23	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	t0002	974	46	8	10	20	1	7	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	t0003	974	3	3	0	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	t0004	974	2	2	0	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HOXA10_chr7_27165605_27179320	1/1	t0001	1309	232	21	29	145	9	26	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0002	1311	146	25	40	56	5	20	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0003	1310	38	32	6	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0004	1309	6	6	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0005	1309	4	4	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0006	1309	4	4	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0007	1311	2	2	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0008	1310	1	0	0	1	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0009	1311	1	0	1	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0010	1310	1	1	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	t0011	1309	1	1	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA11_chr7_27176157_27190232	0/1	t0001	1727	212	47	34	96	8	26	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	1/0	t0002	1728	85	1	3	76	1	3	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0003	1728	78	24	18	18	5	13	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0004	1724	11	4	5	0	0	2	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0005	1727	8	0	8	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0006	1727	7	7	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0007	1728	4	4	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0008	1727	4	0	3	0	0	1	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0009	1728	3	3	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0010	1727	3	2	1	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0011	1728	3	0	3	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0012	1728	2	2	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0013	1728	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0014	1727	1	0	1	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0015	1728	1	1	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0016	1724	1	1	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0017	1727	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0018	1727	1	0	0	0	1	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0019	1728	1	0	0	0	0	1	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0020	1728	1	1	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0021	1727	1	0	0	0	1	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0022	1727	1	1	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0023	1728	1	0	1	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	t0024	1724	1	0	1	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA13_chr7_27189364_27205091	0/1	t0001	3848	202	22	40	99	8	32	copy fasta	HOXA13	chr7	27189364	27205091