JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXA13_chr7_27189364_27205091	1/0	t0002	3849	91	1	12	72	1	4	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0003	3847	27	20	7	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0004	3848	22	17	5	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0005	3848	8	8	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0006	3848	8	7	1	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0007	3848	8	8	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0008	3848	5	0	3	0	0	2	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0009	3848	5	0	3	0	2	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0010	3848	5	3	2	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0011	3849	4	1	0	3	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0012	3848	3	2	0	0	1	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0013	3849	2	0	2	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0014	3848	2	0	0	0	0	2	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0015	3848	2	2	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0016	3848	2	0	1	0	0	1	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0017	3848	2	0	2	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0018	3848	2	0	0	2	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0019	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0020	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0021	3847	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0022	3848	1	0	0	0	0	1	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0023	3848	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0024	3848	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0025	3848	1	0	0	0	0	1	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0026	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0027	3849	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0028	3849	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0029	3849	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0030	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0031	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0032	3848	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0033	3848	1	0	0	0	0	1	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	t0034	3848	1	0	0	1	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA1_chr7_27087993_27101000	1/0	t0001	1536	375	89	74	161	12	38	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0002	1536	20	1	3	13	0	3	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/1	t0003	1536	8	1	0	0	3	3	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0004	1536	3	3	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0005	1536	2	2	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0006	1536	2	2	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0007	1536	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0008	1536	1	1	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0009	1536	1	1	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	t0010	1536	1	0	1	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA2_chr7_27095354_27107683	1/1	t0001	556	392	97	72	161	16	44	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	t0002	556	5	0	0	5	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	t0003	556	5	0	3	0	0	2	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	t0004	556	1	1	0	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	t0005	556	1	0	1	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA3_chr7_27102010_27157583	0/0	t0001	1697	104	14	16	55	3	16	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0002	1697	57	10	16	26	2	3	copy fasta	HOXA3	chr7	27102010	27157583