JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXA3_chr7_27102010_27157583	0/0	t0003	1702	38	3	7	17	1	10	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/1	t0004	1696	22	9	6	1	0	5	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0005	1696	19	18	1	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0006	1698	14	0	8	6	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0007	1701	6	0	6	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0008	1696	6	5	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0009	1695	6	4	0	1	0	1	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0010	1698	5	0	0	5	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0011	1697	5	0	0	5	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0012	1694	5	4	1	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0013	1697	4	0	4	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0014	1697	4	4	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0015	1697	4	0	0	4	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0016	1703	3	0	1	0	0	2	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0017	1696	3	0	0	3	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0018	1694	3	3	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0019	1698	3	3	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	1/0	t0020	1695	3	0	0	0	0	2	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0021	1703	2	2	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0022	1693	2	2	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0023	1701	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0024	1697	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0025	1697	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0026	1698	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0027	1699	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0028	1694	1	1	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0029	1698	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	t0030	1697	1	0	0	0	0	1	copy fasta	HOXA3	chr7	27102010	27157583
HOXA4_chr7_27123525_27135757	0/1	t0001	725	298	55	51	139	10	42	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	t0002	725	92	32	20	35	2	3	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	1/0	t0003	725	14	9	1	0	0	3	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	t0004	725	1	0	0	1	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	t0005	725	1	0	0	1	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA5_chr7_27136052_27148681	0/0	t0001	857	124	11	15	77	5	16	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0002	856	106	5	28	56	4	13	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0003	857	49	7	16	26	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	1/0	t0004	858	26	16	1	2	0	6	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0005	856	23	15	2	3	2	1	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0006	858	14	3	5	4	0	2	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/1	t0007	859	11	5	1	3	0	1	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0008	859	8	6	0	1	0	1	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0009	855	7	2	0	4	1	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0010	856	5	0	0	5	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0011	857	4	2	2	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0012	855	4	4	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0013	856	4	0	2	0	0	2	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0014	857	3	3	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0015	857	3	3	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0016	858	2	1	1	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0017	858	1	1	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681