JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXA5_chr7_27136052_27148681	0/0	t0018	857	1	0	1	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0019	844	1	1	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0020	858	1	1	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	t0021	829	1	0	0	1	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA6_chr7_27140396_27152774	0/0	t0001	278	115	4	21	65	7	18	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0002	283	64	4	10	46	1	3	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0003	283	59	18	18	19	1	3	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/1	t0004	278	36	20	4	6	1	4	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0005	288	35	0	6	19	2	8	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0006	273	28	18	10	0	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	1/0	t0007	288	27	7	2	15	0	2	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0008	268	12	12	0	0	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0009	293	5	0	3	2	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0010	268	2	0	0	2	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0011	283	1	0	0	1	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0012	278	1	1	0	0	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	t0013	283	1	0	0	1	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA7_chr7_27148716_27161675	1/1	t0001	1324	348	64	62	168	10	42	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0002	1324	13	12	1	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0003	1324	9	7	1	0	0	1	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0004	1324	5	0	0	5	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0005	1325	5	2	3	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0006	1324	4	0	4	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0007	1319	3	0	3	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0008	1324	2	2	0	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0009	1324	1	0	0	1	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0010	1324	1	0	0	1	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0011	1324	1	1	0	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0012	1324	1	0	0	1	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0013	1324	1	0	0	0	0	1	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0014	1324	1	1	0	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	t0015	1324	1	1	0	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA9_chr7_27157438_27170537	0/0	t0001	1246	197	21	32	107	6	31	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	1/0	t0002	1246	152	38	32	71	4	6	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/1	t0003	1246	29	23	2	0	0	3	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0004	1246	14	5	5	0	1	3	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0005	1243	13	0	0	12	0	1	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0006	1246	10	0	8	2	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0007	1246	6	5	1	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0008	1246	3	3	0	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0009	1246	2	2	0	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0010	1246	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0012	1246	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0013	1246	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0014	1246	1	0	0	0	1	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	t0015	1246	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXB13_chr17_48719763_48733750	1/1	t0001	2185	311	72	40	169	4	24	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0002	2185	57	4	30	1	7	15	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0003	2185	23	7	2	8	2	4	copy fasta	HOXB13	chr17	48719763	48733750