JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXB13_chr17_48719763_48733750	0/0	t0004	2185	9	3	1	0	1	4	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0005	2185	9	0	0	8	0	1	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0006	2185	3	0	0	3	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0007	2185	3	3	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0008	2185	2	0	0	2	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0009	2209	2	0	0	2	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0010	2185	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0011	2185	1	1	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0012	2185	1	0	1	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0013	2185	1	0	1	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0014	2185	1	1	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0015	2185	1	0	1	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	t0016	2185	1	1	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB1_chr17_48523526_48536011	1/1	t0001	1129	372	80	65	176	16	33	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0002	1129	33	6	9	11	1	6	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0003	1129	5	5	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0004	1129	4	4	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0005	1129	3	2	1	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0006	1129	2	0	2	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0007	1129	2	0	0	2	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0008	1129	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0009	1129	1	0	0	0	0	1	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0010	1129	1	0	0	0	1	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0011	1129	1	0	0	1	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	t0012	1129	1	0	1	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB2_chr17_48537655_48550109	0/1	t0001	613	211	11	41	119	4	35	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0002	613	107	42	13	47	3	2	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0003	614	40	7	9	15	2	7	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0004	613	16	10	3	3	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0005	613	14	14	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0006	613	12	2	4	1	2	3	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0007	613	9	9	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0008	614	7	0	3	1	1	2	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0009	612	4	0	0	4	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	1/0	t0010	612	2	0	1	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0011	613	1	0	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0012	613	1	0	0	0	0	1	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0013	613	1	0	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	t0014	613	1	1	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB3_chr17_48543870_48595241	0/0	t0001	2011	64	17	4	31	2	10	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0002	2012	49	5	5	37	0	2	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/1	t0003	2010	47	7	16	18	1	4	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0004	2009	38	11	10	11	3	3	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0005	2011	30	1	3	24	1	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	1/0	t0006	2006	20	9	4	3	1	2	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0007	2008	19	1	5	9	0	4	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0008	2013	15	1	4	10	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0009	2012	13	7	1	5	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0010	2007	12	5	1	5	0	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0011	2010	11	4	1	6	0	0	copy fasta	HOXB3	chr17	48543870	48595241