JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXB3_chr17_48543870_48595241	0/0	t0012	2009	6	6	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0013	2009	5	2	1	2	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0014	2009	5	0	1	0	2	2	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0015	2010	4	0	2	0	1	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0016	2011	3	0	0	3	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0017	2010	3	3	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0018	2011	2	2	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0019	2010	2	0	2	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0020	2010	2	0	2	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0021	2009	2	1	1	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0022	2009	2	2	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0023	2010	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0024	2010	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0025	2011	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0026	2009	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0027	2009	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0028	2008	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0029	2006	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0030	2007	1	0	0	0	0	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0031	2011	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0032	2012	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0033	2008	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0034	2007	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0035	2006	1	0	0	0	0	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0036	2010	1	0	0	0	0	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0037	2011	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0038	2009	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0039	2010	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0040	2009	1	0	1	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0041	2009	1	0	0	0	1	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	t0042	2011	1	0	0	0	0	1	copy fasta	HOXB3	chr17	48543870	48595241
HOXB4_chr17_48570507_48583350	0/1	t0001	1248	169	9	33	99	9	18	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0002	1247	112	38	20	35	3	16	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0003	1243	85	30	6	46	2	1	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	1/0	t0004	1247	20	16	3	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0005	1243	8	0	2	1	2	3	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0006	1243	2	0	2	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0007	1248	2	0	0	0	0	2	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0008	1244	2	2	0	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0009	1247	2	0	0	2	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0010	1247	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0011	1247	1	0	1	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0012	1243	1	1	0	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0013	1248	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0014	1248	1	0	1	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	t0015	1244	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB5_chr17_48586257_48598779	0/1	t0001	1050	184	8	44	104	7	20	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0002	1050	166	55	20	76	4	11	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0003	1050	33	13	7	10	1	2	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0004	1050	10	9	1	0	0	0	copy fasta	HOXB5	chr17	48586257	48598779