JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXB5_chr17_48586257_48598779	0/0	t0005	1051	7	6	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0006	1051	6	4	2	0	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	1/0	t0007	1050	4	1	2	0	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0008	1050	2	2	0	0	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0009	1050	1	0	0	0	0	1	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	t0010	1050	1	0	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB6_chr17_48590751_48609986	0/1	t0001	1002	133	7	23	83	5	14	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	1/0	t0002	1002	94	31	22	29	2	9	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0003	1008	50	5	0	43	1	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0004	1005	27	7	8	9	1	2	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0005	1005	12	3	6	2	1	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0006	1005	11	11	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0007	1008	8	0	2	0	2	4	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0008	1005	7	7	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0009	1002	6	5	0	0	0	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0010	999	4	1	1	0	1	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0011	1002	3	0	0	2	0	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0012	1002	3	3	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0013	1011	3	3	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0014	1011	3	1	1	0	1	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0015	1011	2	2	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0016	999	2	0	1	1	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0017	1002	2	0	0	2	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0018	1002	2	2	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0019	1005	2	0	2	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0020	1008	2	2	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0021	1002	1	0	0	1	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0022	1002	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0023	1005	1	0	0	1	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0024	1011	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0025	1005	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0026	1008	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0027	1008	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0028	1011	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0029	1014	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0030	1011	1	0	0	1	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0031	1002	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0032	1002	1	0	0	0	0	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0033	1002	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0034	1005	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0035	1008	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0036	1002	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0037	1002	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	t0038	1014	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB7_chr17_48602232_48616017	1/1	t0001	710	230	28	38	116	9	37	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0002	710	55	4	3	44	2	2	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0003	710	42	35	6	0	1	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0004	711	34	8	9	13	1	3	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0005	711	19	9	2	8	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0006	711	14	2	11	1	0	0	copy fasta	HOXB7	chr17	48602232	48616017