JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXB7_chr17_48602232_48616017	0/0	t0007	710	5	5	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0008	709	5	0	2	1	1	1	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0009	710	2	0	1	1	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0010	711	2	1	0	1	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0011	711	2	1	0	1	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0012	711	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0013	710	1	0	0	0	0	1	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0014	709	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	t0015	710	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB8_chr17_48607346_48620292	1/1	t0001	1445	244	65	40	105	6	26	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0002	1437	50	6	7	31	4	2	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0003	1445	40	0	10	23	0	7	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0004	1447	19	2	2	13	0	2	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0005	1441	17	9	2	1	2	3	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0006	1435	12	0	1	10	0	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0007	1446	10	2	1	5	1	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0008	1445	6	3	2	0	1	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0009	1445	5	3	1	0	0	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0010	1445	3	3	0	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0011	1447	3	3	0	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0012	1445	2	0	2	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0013	1436	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0014	1438	1	0	0	0	0	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0015	1431	1	1	0	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0016	1445	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0017	1448	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0018	1445	1	0	0	0	0	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0019	1445	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0020	1445	1	1	0	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0021	1446	1	0	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0022	1445	1	0	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	t0023	1445	1	0	0	0	0	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB9_chr17_48616156_48631358	0/1	t0001	1834	163	22	30	79	10	21	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0002	1834	72	33	6	25	2	6	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0003	1834	57	4	4	45	2	2	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0004	1834	49	0	12	32	0	5	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0005	1834	43	18	11	11	1	2	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0006	1834	14	7	5	0	1	1	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	1/0	t0007	1834	13	8	3	0	0	1	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0008	1834	3	0	0	3	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0009	1834	1	0	0	0	0	1	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0010	1834	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0011	1819	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0012	1834	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0013	1834	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0014	1834	1	0	0	0	0	1	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0015	1834	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	t0016	1834	1	0	1	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXC10_chr12_53980146_53995279	0/0	t0001	946	177	14	39	97	9	18	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0002	948	117	23	26	40	7	21	copy fasta	HOXC10	chr12	53980146	53995279