JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXC10_chr12_53980146_53995279	0/0	t0003	947	17	12	3	0	0	2	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0004	949	16	8	5	2	0	1	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0005	948	13	13	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0006	949	7	7	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0007	946	4	4	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0008	946	3	0	0	3	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0009	948	3	3	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0010	946	3	3	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0011	948	2	0	2	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0012	948	2	2	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0013	946	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0014	946	1	0	0	1	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0015	946	1	0	0	1	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0016	949	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0017	948	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0018	947	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0019	949	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	t0020	947	1	0	1	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC11_chr12_53968126_53982643	0/1	t0001	2365	144	9	29	81	9	15	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0002	2370	90	14	27	32	5	12	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	1/0	t0003	2347	24	16	0	6	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0004	2364	18	2	1	14	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0005	2366	18	3	9	2	2	2	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0006	2369	18	4	3	7	1	3	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0007	2374	7	7	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0008	2347	6	5	1	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0009	2375	6	6	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0010	2366	4	4	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0011	2366	4	0	1	1	0	2	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0012	2365	4	0	0	4	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0013	2365	3	3	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0014	2346	3	3	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0015	2354	3	0	0	3	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0016	2373	3	0	0	0	0	3	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0017	2348	2	1	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0018	2365	2	0	0	2	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0019	2364	2	0	0	2	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0020	2364	2	0	0	2	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0021	2364	2	0	1	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0022	2365	2	0	0	1	1	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0023	2365	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0024	2374	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0025	2365	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0026	2365	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0027	2366	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0028	2367	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0029	2366	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0030	2346	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0031	2369	1	0	1	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0032	2370	1	0	1	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643