Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKFY1_chr17_4158821_4268979	0/0	t0001	3997	122	31	26	53	5	7	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0002	3997	38	11	5	18	1	3	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0003	3997	32	0	5	25	0	2	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/1	t0004	3997	31	4	9	10	0	7	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	1/0	t0005	3997	18	15	2	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0006	3997	9	9	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0007	3997	7	1	4	0	1	1	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0008	3997	5	0	3	0	1	1	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0009	3997	3	3	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0010	3996	3	0	0	3	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0011	3997	2	1	1	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0012	3997	2	2	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0013	3997	2	2	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0014	3997	2	2	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0015	3997	2	0	1	0	1	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0016	3997	2	0	2	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0017	3997	2	0	0	2	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0018	3997	2	2	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0019	3997	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0020	3997	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0021	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0022	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0023	3997	1	0	0	0	1	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0024	3997	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0025	3997	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0026	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0027	3997	1	0	0	0	0	1	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0028	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0029	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0030	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0031	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0032	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0033	3997	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	t0034	3997	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKHD1_chr5_140396833_140544849	1/1	t0001	567	319	87	54	128	18	30	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	t0002	567	2	0	2	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	t0003	567	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKH_chr5_14699800_14876778	0/1	t0001	6729	61	17	10	23	1	9	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0002	6721	37	7	13	11	1	5	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	1/0	t0003	6729	13	0	0	12	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0004	6721	9	0	0	8	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0005	6733	8	0	5	2	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0006	6730	7	5	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0007	6730	7	0	1	3	0	3	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0008	6728	7	7	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0009	6730	4	4	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0010	6730	4	3	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0011	6729	3	0	0	3	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0012	6729	3	3	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0013	6730	3	3	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778