JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXC11_chr12_53968126_53982643	0/0	t0033	2347	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0034	2347	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0035	2348	1	0	0	0	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0036	2351	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0037	2363	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0038	2365	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0039	2365	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0040	2365	1	0	0	0	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0041	2364	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0042	2366	1	0	0	0	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0043	2365	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0044	2369	1	0	1	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0045	2370	1	0	1	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0046	2371	1	0	0	1	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0047	2370	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0048	2374	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0049	2375	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0050	2376	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	t0051	2375	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC12_chr12_53949903_53963956	0/0	t0001	2417	179	15	28	116	10	10	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	1/0	t0002	2418	100	28	23	35	1	12	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0003	2417	73	20	20	20	2	11	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0004	2417	8	8	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0005	2417	6	0	3	0	2	1	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0006	2417	6	6	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0007	2417	5	0	2	0	0	3	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0008	2417	4	4	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0009	2409	3	1	2	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/1	t0010	2417	2	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0011	2417	2	0	0	2	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0012	2417	2	1	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0013	2418	2	2	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0014	2418	2	0	0	0	0	2	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0015	2418	2	0	0	2	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0016	2417	2	2	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0017	2417	2	2	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0018	2417	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0019	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0020	2417	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0021	2417	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0022	2417	1	0	0	0	1	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0023	2417	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0024	2417	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0025	2417	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0026	2417	1	0	0	0	0	1	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0027	2417	1	0	0	0	0	1	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0028	2417	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0029	2418	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0030	2418	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0031	2418	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956