JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXC12_chr12_53949903_53963956	0/0	t0032	2418	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0033	2418	1	0	0	0	0	1	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0034	2418	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0035	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0036	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0037	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0038	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0039	2417	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0040	2418	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	t0041	2417	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC13_chr12_53933831_53951544	0/1	t0001	1365	192	22	42	104	10	13	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	1/0	t0002	1365	108	56	16	14	2	19	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0003	1365	43	0	10	33	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0004	1365	32	1	7	13	0	11	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0005	1365	17	15	2	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0006	1365	2	2	0	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0007	1365	1	0	0	1	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0008	1365	1	0	0	1	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0009	1365	1	1	0	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0010	1365	1	0	0	0	0	1	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0011	1365	1	0	0	1	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0012	1365	1	0	1	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0013	1365	1	0	0	1	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	t0014	1365	1	1	0	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC4_chr12_54048835_54061030	1/0	t0001	914	118	13	11	81	3	9	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0002	910	82	27	12	34	3	6	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0003	912	63	14	15	23	3	8	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0004	910	61	17	7	28	1	8	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/1	t0005	916	14	3	1	6	1	2	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0006	912	13	0	3	5	1	4	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0007	910	8	7	1	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0008	914	6	0	3	3	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0009	912	5	2	1	2	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0010	912	4	0	1	0	2	1	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0011	916	4	0	0	4	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0012	910	3	0	0	3	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0013	918	3	0	2	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0014	911	2	2	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0015	910	2	2	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0016	914	2	0	0	2	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0017	910	1	1	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0018	911	1	0	1	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0019	910	1	1	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0020	910	1	1	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0021	913	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0022	913	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0023	912	1	0	1	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0024	912	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0025	916	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	t0026	914	1	0	1	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030