JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXC5_chr12_54028050_54040361	1/0	t0001	943	184	55	39	57	8	24	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/1	t0002	943	141	19	24	81	7	9	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0003	943	38	2	0	35	1	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0004	943	24	0	6	11	0	7	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0005	943	12	11	1	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0006	942	6	1	5	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0007	943	5	0	3	0	0	2	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0008	943	2	2	0	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0009	943	1	0	0	1	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	t0010	943	1	0	0	1	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC6_chr12_54023440_54035823	1/0	t0001	944	243	63	51	88	8	32	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/1	t0002	944	144	18	24	85	7	9	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	t0003	944	8	1	5	0	1	1	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	t0004	944	6	5	1	0	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	t0005	944	1	0	1	0	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	t0006	944	1	0	0	1	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	t0007	944	1	1	0	0	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC8_chr12_54003985_54017769	0/0	t0001	1686	70	8	11	39	1	11	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	1/0	t0002	1689	48	19	11	12	0	5	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0003	1691	32	2	13	12	4	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0004	1690	13	0	1	11	1	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0005	1690	13	3	0	10	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0006	1687	12	4	1	7	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0007	1685	10	1	4	1	4	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0008	1690	9	3	0	4	0	2	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0009	1687	7	2	0	3	0	2	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0010	1691	6	0	2	4	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0011	1686	5	0	0	5	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0012	1689	5	4	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0013	1690	4	0	1	3	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0014	1688	4	0	3	0	1	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0015	1688	4	3	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0016	1689	4	3	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0017	1687	3	2	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0018	1691	3	0	0	2	1	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0019	1688	3	3	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0020	1690	3	3	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0021	1686	2	0	0	2	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/1	t0022	1688	2	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0023	1687	2	0	0	2	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0024	1688	2	2	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0025	1686	2	2	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0026	1690	2	1	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0027	1689	2	0	0	0	0	2	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0028	1690	2	2	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0029	1689	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0030	1688	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0031	1687	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0032	1685	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0033	1686	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769