JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXC8_chr12_54003985_54017769	0/0	t0034	1687	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0035	1686	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0036	1686	1	0	0	0	1	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0037	1686	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0038	1687	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0039	1687	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0040	1685	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0041	1687	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0042	1685	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0043	1684	1	0	0	0	1	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0044	1713	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0045	1692	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0046	1692	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0047	1690	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0048	1689	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0049	1690	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0050	1691	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0051	1690	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0052	1689	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0053	1692	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0054	1689	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0055	1691	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0056	1688	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0057	1691	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0058	1690	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0059	1689	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	t0060	1690	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC9_chr12_53995161_54008337	0/1	t0001	692	199	35	37	94	13	19	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	1/0	t0002	692	111	33	25	40	3	9	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0003	693	16	12	2	0	0	2	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0004	690	4	0	1	0	2	1	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0005	693	4	4	0	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0006	693	2	1	1	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0007	693	2	2	0	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0008	703	1	0	0	1	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0009	692	1	0	0	1	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0010	692	1	0	0	0	0	1	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	t0011	692	1	1	0	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXD10_chr2_176111778_176124937	0/0	t0001	765	50	2	10	31	1	6	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0002	749	44	0	0	44	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	1/0	t0003	763	40	5	12	16	0	6	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0004	773	28	4	4	9	2	9	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0005	775	27	4	4	12	2	5	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0006	777	27	8	3	11	1	4	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0007	767	25	2	2	18	1	2	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0008	771	24	1	8	12	2	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0009	779	24	5	3	13	1	2	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0010	779	19	7	10	0	0	2	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0011	777	14	4	6	1	1	2	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0012	769	10	0	0	9	0	1	copy fasta	HOXD10	chr2	176111778	176124937