JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXD10_chr2_176111778_176124937	0/0	t0013	771	7	1	4	0	2	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0014	781	7	0	0	6	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0015	751	5	0	0	5	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0016	777	5	3	2	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0017	779	5	4	1	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0018	773	4	2	0	0	0	2	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0019	765	4	0	4	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0020	759	3	3	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0021	775	3	2	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0022	781	3	1	2	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0023	785	3	3	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0024	753	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0025	767	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0026	775	2	1	1	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0027	773	2	1	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0028	779	2	1	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0029	783	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0030	771	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0031	749	1	0	1	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0032	759	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0033	763	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0034	763	1	0	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0035	765	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0036	765	1	0	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0037	769	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0038	771	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/1	t0039	769	1	0	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0040	771	1	0	1	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0041	771	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0042	769	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0043	775	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0044	774	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0045	774	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0046	777	1	0	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0047	777	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0048	775	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0049	781	1	0	0	0	1	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0050	779	1	0	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0051	778	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0052	783	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0053	783	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0054	787	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0055	789	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0056	779	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0057	781	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0058	777	1	0	0	0	0	1	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0059	759	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0060	773	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0061	771	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	t0062	775	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937