JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXD10_chr2_176111778_176124937	0/0	t0063	777	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD11_chr2_176102280_176114754	1/1	t0001	689	168	7	29	104	4	22	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	t0002	689	158	49	34	51	7	17	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	t0003	689	101	30	17	43	3	8	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	t0004	689	2	2	0	0	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	t0005	689	1	0	0	0	0	1	copy fasta	HOXD11	chr2	176102280	176114754
HOXD12_chr2_176094795_176107489	1/1	t0001	1737	276	15	52	161	12	34	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0002	1736	86	44	22	6	2	12	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0003	1736	8	0	1	5	0	2	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0004	1737	7	7	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0005	1737	7	7	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0006	1736	4	3	1	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0007	1737	4	4	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0008	1736	4	4	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0009	1737	2	0	0	2	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0010	1737	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0011	1736	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0012	1737	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0013	1736	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0014	1736	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	t0015	1736	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD13_chr2_176087721_176100944	1/1	t0001	1385	298	53	68	122	15	38	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0002	1386	62	0	0	60	0	2	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0003	1385	19	19	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0004	1385	9	2	2	2	1	2	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0005	1385	7	7	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0006	1385	3	0	1	0	0	2	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0007	1382	3	0	0	3	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0008	1385	2	0	2	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0009	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0010	1386	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0011	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0012	1385	1	0	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0013	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0014	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0015	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0016	1772	1	0	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0017	1385	1	0	1	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0018	1386	1	0	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	t0019	1385	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD1_chr2_176183668_176195907	1/1	t0001	900	339	83	64	143	15	32	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0002	900	5	4	1	0	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0003	900	5	0	2	0	0	3	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0004	901	3	0	0	3	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0005	900	3	0	1	0	0	2	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0006	900	1	1	0	0	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0007	900	1	0	0	0	1	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	t0008	900	1	0	0	0	0	1	copy fasta	HOXD1	chr2	176183668	176195907
HOXD3_chr2_176152307_176178098	0/1	t0001	1151	170	42	17	88	6	16	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	1/0	t0002	1151	73	4	18	42	5	3	copy fasta	HOXD3	chr2	176152307	176178098