JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HP1BP3_chr1_20735266_20792307	0/0	t0007	4746	8	6	2	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0008	4745	8	4	0	0	2	2	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0009	4745	8	8	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0010	4745	3	0	1	0	1	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0011	4746	3	3	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0012	4745	2	1	1	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0013	4745	2	0	0	2	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0014	4745	2	0	2	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0015	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0016	4745	1	0	1	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0017	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0018	4745	1	0	0	1	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0019	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0020	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0021	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0022	4745	1	0	0	0	0	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0023	4745	1	0	0	0	0	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0024	4745	1	0	1	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0025	4745	1	0	1	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0026	4745	1	0	0	1	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0027	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0028	4745	1	0	0	1	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0029	4745	1	0	0	1	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0030	4745	1	0	1	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0031	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0032	4745	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HPCAL1_chr2_10297904_10432604	0/0	t0001	1168	96	22	18	26	6	24	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/1	t0002	1168	92	17	24	47	1	2	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	1/0	t0003	1168	66	22	6	25	5	7	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0004	1168	24	1	8	12	0	3	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0005	1168	8	7	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0006	1168	3	2	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0007	1168	3	1	2	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0008	1168	3	3	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0009	1168	2	0	0	2	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0010	1168	2	0	0	2	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0011	1168	2	2	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0012	1168	2	1	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0013	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0014	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0015	1168	1	0	0	1	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0016	1168	1	0	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0017	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0018	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0019	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0020	1168	1	0	0	1	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0021	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0022	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	t0023	1168	1	1	0	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL4_chr1_39673648_39696433	0/0	t0001	4033	102	0	19	67	2	14	copy fasta	HPCAL4	chr1	39673648	39696433