JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPCAL4_chr1_39673648_39696433	0/1	t0002	4033	66	16	21	12	8	8	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	1/0	t0003	4025	54	4	14	29	1	5	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0004	4025	46	12	8	17	1	8	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0005	4025	41	6	3	28	0	4	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0006	4025	34	1	2	24	2	5	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0007	4025	12	11	1	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0008	4025	10	9	1	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0009	4025	8	0	0	8	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0010	4025	6	6	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0011	4033	6	5	1	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0012	4025	4	0	1	0	2	1	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0013	4033	4	0	0	4	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0014	4025	4	0	0	4	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0015	4025	4	4	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0016	4025	3	3	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0017	4025	2	2	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0018	4025	2	2	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0019	4025	2	0	0	0	0	2	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0020	4025	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0021	4025	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0022	4033	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0023	4033	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0024	4025	1	0	0	1	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0025	4025	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0026	4025	1	0	0	0	0	1	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0027	4033	1	0	1	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0028	4025	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	t0029	4025	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCA_chr1_32881491_32899646	1/1	t0001	831	351	75	55	165	12	42	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0002	831	15	2	11	0	0	2	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0003	831	8	8	0	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0004	831	7	6	1	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0005	831	2	2	0	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0006	831	1	1	0	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0007	831	1	1	0	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0008	831	1	1	0	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0009	831	1	0	1	0	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPCA_chr1_32881491_32899646	0/0	t0010	831	1	0	0	1	0	0	copy fasta	HPCA	chr1	32881491	32899646
HPDL_chr1_45321895_45333710	1/1	t0001	701	381	74	71	176	18	40	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0002	701	21	20	1	0	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0003	701	2	1	1	0	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0004	701	2	2	0	0	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0005	701	2	1	1	0	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0006	701	1	0	0	1	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	t0007	701	1	0	0	1	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPD_chr12_121834527_121863859	1/1	t0001	238	406	92	82	172	16	42	copy fasta	HPD	chr12	121834527	121863859
HPF1_chr4_169724470_169762944	1/1	t0001	176	297	85	49	111	9	41	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	t0002	174	22	11	3	7	1	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	t0003	176	1	0	0	0	0	1	copy fasta	HPF1	chr4	169724470	169762944
HPGDS_chr4_94293535_94347836	1/0	t0001	997	162	59	30	48	9	15	copy fasta	HPGDS	chr4	94293535	94347836