JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPGDS_chr4_94293535_94347836	0/1	t0002	997	131	17	19	75	4	15	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0003	997	5	4	0	0	1	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0004	997	5	1	2	0	0	2	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0005	997	3	3	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0006	997	2	2	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0007	997	1	0	0	1	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0008	997	1	0	1	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0009	997	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	t0010	997	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGD_chr4_174485175_174527488	0/1	t0001	1819	150	24	30	68	8	19	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0002	1819	125	10	15	80	4	16	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	1/0	t0003	1819	77	11	17	34	3	11	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0004	1819	19	17	1	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0005	1819	18	17	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0006	1815	5	4	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0007	1819	4	3	0	0	1	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0008	1819	2	0	2	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0009	1819	2	2	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0010	1819	1	0	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0011	1819	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0012	1819	1	1	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0013	1807	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0014	1819	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0015	1819	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0016	1819	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0017	1819	1	1	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0018	1819	1	0	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0019	1819	1	0	0	0	0	1	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0020	1819	1	0	0	0	0	1	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	t0021	1819	1	0	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPN_chr19_35036721_35071573	0/0	t0001	493	211	20	53	105	11	22	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	1/1	t0002	493	159	61	17	52	5	22	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	t0003	493	8	8	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	t0004	493	3	3	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	t0005	493	1	1	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	t0006	493	1	1	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	t0007	493	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPRT1_chrX_134455165_134505668	1/1	t0001	739	272	57	51	132	7	23	copy fasta	HPRT1	chrX	134455165	134505668
HPRT1_chrX_134455165_134505668	0/0	t0002	739	2	0	0	2	0	0	copy fasta	HPRT1	chrX	134455165	134505668
HPRT1_chrX_134455165_134505668	0/0	t0003	737	1	1	0	0	0	0	copy fasta	HPRT1	chrX	134455165	134505668
HPRT1_chrX_134455165_134505668	0/0	t0004	739	1	0	0	1	0	0	copy fasta	HPRT1	chrX	134455165	134505668
HPR_chr16_72058226_72082246	1/1	t0001	196	409	82	74	187	18	46	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	t0002	196	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	t0003	196	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	t0004	196	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPS1_chr10_98411198_98451935	1/1	t0001	1601	121	9	33	56	8	13	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0002	1601	86	11	9	51	2	13	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0003	1601	56	25	5	19	2	5	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0004	1601	37	1	8	17	3	8	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0005	1601	33	14	5	7	1	6	copy fasta	HPS1	chr10	98411198	98451935