Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ANKH_chr5_14699800_14876778	0/0	t0014	6722	3	2	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0015	6722	3	3	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0016	6720	3	3	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0017	6729	2	0	0	2	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0018	6730	2	0	2	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0019	6729	2	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0020	6732	2	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0021	6721	2	0	0	2	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0022	6721	2	0	0	2	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0023	6722	2	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0024	6721	2	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0025	6722	2	2	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0026	6730	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0027	6734	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0028	6733	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0029	6733	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0030	6729	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0031	6730	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0032	6730	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0033	6729	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0034	6729	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0035	6729	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0036	6729	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0037	6729	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0038	6729	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0039	6729	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0040	6730	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0041	6729	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0042	6730	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0043	6733	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0044	6733	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0045	6733	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0046	6729	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0047	6730	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0048	6728	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0049	6728	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0050	6721	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0051	6721	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0052	6722	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0053	6725	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0054	6721	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0055	6722	1	0	1	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0056	6721	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0057	6721	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0058	6722	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0059	6722	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0060	6722	1	0	0	0	1	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0061	6722	1	0	0	1	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0062	6721	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	t0063	6726	1	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778