JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPS1_chr10_98411198_98451935	0/0	t0006	1601	28	0	10	17	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0007	1601	8	0	0	8	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0008	1601	6	6	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0009	1601	5	0	0	5	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0010	1601	5	1	0	3	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0011	1601	5	5	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0012	1601	5	2	2	0	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0013	1601	4	2	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0014	1601	4	0	0	4	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0015	1601	3	1	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0016	1601	2	0	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0017	1601	2	1	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0018	1601	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0019	1601	2	1	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0020	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0021	1601	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0022	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0023	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0024	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0025	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0026	1601	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0027	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0028	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0029	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0030	1601	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0031	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0032	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0033	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0034	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0035	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0036	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0037	1601	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0038	1617	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	t0039	1601	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS3_chr3_149124638_149178732	1/0	t0001	1597	139	16	24	72	9	17	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/1	t0002	1601	58	3	8	37	3	6	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0003	1597	44	19	1	23	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0004	1599	26	7	4	12	1	2	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0005	1603	18	3	4	8	0	3	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0006	1605	12	9	1	1	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0007	1595	12	7	0	5	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0008	1605	12	1	4	0	0	7	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0009	1597	10	0	2	6	1	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0010	1606	5	3	2	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0011	1595	5	1	1	0	0	3	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0012	1610	4	3	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0013	1598	4	4	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0014	1612	3	3	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0015	1598	3	3	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0016	1599	3	0	2	0	1	0	copy fasta	HPS3	chr3	149124638	149178732