JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPS3_chr3_149124638_149178732	0/0	t0017	1607	3	0	0	0	0	3	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0018	1597	2	0	2	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0019	1604	2	2	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0020	1599	2	0	0	2	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0021	1597	2	0	0	2	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0022	1597	2	0	0	0	2	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0023	1611	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0024	1609	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0025	1601	1	0	0	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0026	1613	1	0	0	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0027	1599	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0028	1618	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0029	1613	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0030	1611	1	0	0	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0031	1612	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0032	1607	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0033	1607	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0034	1608	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0035	1602	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0036	1600	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0037	1597	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0038	1597	1	0	0	0	1	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0039	1597	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0040	1580	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0041	1609	1	0	0	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0042	1601	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	t0043	1511	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS4_chr22_26445882_26488783	0/0	t0001	2930	47	2	4	26	9	6	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0002	2936	35	2	7	19	0	7	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0003	2934	34	6	9	12	1	6	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0004	2932	33	9	4	11	3	6	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0005	2930	20	1	5	13	1	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0006	2928	19	10	3	3	0	3	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0007	2924	18	0	0	17	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	1/0	t0008	2940	15	0	5	7	0	2	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0009	2926	14	12	1	0	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0010	2936	12	1	2	9	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0011	2922	11	11	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0012	2932	11	0	1	7	0	3	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0013	2934	7	0	0	7	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0014	2928	7	0	5	0	1	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0015	2934	6	1	2	3	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0016	2940	6	0	2	3	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0017	2932	6	0	0	6	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0018	2926	4	4	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0019	2934	4	0	3	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0020	2936	4	0	0	4	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0021	2924	3	3	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0022	2924	3	1	2	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0023	2922	3	0	0	3	0	0	copy fasta	HPS4	chr22	26445882	26488783