JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPS4_chr22_26445882_26488783	0/0	t0074	2926	1	0	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0075	2940	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0076	2936	1	0	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0077	2926	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0078	2928	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0079	2926	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0080	2928	1	0	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	t0081	2938	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS5_chr11_18273676_18327140	1/1	t0001	1451	119	49	15	42	1	10	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0002	1451	112	15	15	72	2	8	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0003	1451	89	0	26	43	9	11	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0004	1451	20	13	4	0	2	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0005	1451	9	7	2	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0006	1451	6	6	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0007	1451	5	0	0	5	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0008	1451	4	3	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0009	1451	3	2	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0010	1451	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0011	1451	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0012	1451	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0013	1451	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	t0014	1451	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS6_chr10_102060349_102073036	1/1	t0001	361	258	61	63	90	11	31	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	t0002	361	137	18	19	88	3	9	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	t0003	361	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPSE2_chr10_98452077_99240852	0/0	t0001	2548	36	7	6	18	1	4	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0002	2548	30	9	4	14	1	2	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0003	2548	10	6	0	4	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0004	2548	7	0	3	4	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0005	2549	6	6	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0006	2548	5	4	1	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0007	2548	4	4	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0008	2548	4	4	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0009	2548	4	1	0	2	0	1	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0010	2548	3	1	2	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0011	2548	3	2	1	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0012	2548	3	3	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0013	2548	3	0	0	3	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0014	2549	3	3	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0015	2548	2	2	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0016	2538	2	2	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0017	2548	2	0	0	2	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0018	2548	1	0	0	1	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0019	2548	1	0	0	1	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0020	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0021	2548	1	0	0	0	0	1	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0022	2548	1	0	0	0	1	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0023	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0024	2548	1	0	0	1	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0025	2548	1	0	0	0	1	0	copy fasta	HPSE2	chr10	98452077	99240852