JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HPSE2_chr10_98452077_99240852	0/0	t0026	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0027	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0028	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0029	2548	1	0	1	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0030	2548	1	0	1	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0031	2548	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	t0032	2548	1	0	1	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE_chr4_83287461_83339848	0/0	t0001	2950	200	42	43	81	6	28	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/1	t0002	2950	35	1	14	10	4	5	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	1/0	t0003	2950	19	14	1	0	1	2	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0004	2950	9	9	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0005	2950	9	7	2	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0006	2950	8	8	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0007	2950	7	0	3	4	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0008	2950	6	0	0	6	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0009	2950	5	5	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0010	2950	5	5	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0011	2950	3	3	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0012	2951	3	0	1	0	0	2	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0013	2950	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0014	2950	1	0	0	1	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0015	2950	1	0	0	1	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0016	2950	1	0	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0017	2950	1	0	0	1	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0018	2950	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0019	2950	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0020	2950	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0021	2950	1	0	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0022	2950	1	0	0	0	0	1	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	t0023	2950	1	0	0	0	1	0	copy fasta	HPSE	chr4	83287461	83339848
HPX_chr11_6426049_6445987	1/1	t0001	187	424	89	81	186	18	48	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	t0002	187	4	1	3	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	t0003	187	3	3	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	t0004	187	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HP_chr16_72049505_72066055	1/0	t0001	314	239	22	60	116	12	28	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0002	314	112	4	15	67	6	20	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0003	314	43	42	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0004	314	15	14	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0005	314	10	9	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0006	314	2	0	0	2	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0007	314	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0008	314	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0009	314	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	t0010	314	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HRAS_chr11_527242_540576	0/0	t0001	501	328	80	54	150	13	31	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0002	501	38	7	5	19	2	5	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/1	t0003	495	13	0	11	0	1	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0004	501	6	1	1	0	0	4	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0005	501	2	2	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0006	501	2	0	2	0	0	0	copy fasta	HRAS	chr11	527242	540576