JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HRAS_chr11_527242_540576	0/0	t0007	501	1	0	0	1	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0008	501	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0009	501	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0010	501	1	0	1	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0011	501	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0012	501	1	0	0	0	0	1	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0013	501	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	t0014	501	1	0	0	0	0	1	copy fasta	HRAS	chr11	527242	540576
HRCT1_chr9_35901202_35912136	1/1	t0001	588	423	87	70	213	16	35	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	t0002	588	3	0	3	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	t0003	588	2	0	1	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	t0004	588	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	t0005	588	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRC_chr19_49146198_49160396	1/1	t0001	258	402	94	80	168	16	42	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	t0002	258	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	t0003	258	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRG_chr3_186661014_186683234	1/1	t0001	370	459	89	84	222	14	48	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0002	370	7	6	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0003	370	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0004	370	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0005	370	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0006	370	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0007	370	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	t0008	370	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRH1_chr3_11149493_11268557	0/1	t0001	3156	180	25	26	98	7	23	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0002	3156	79	18	13	37	1	10	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0003	3156	20	7	0	13	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0004	3156	15	4	2	0	4	5	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0005	3156	11	8	3	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0006	3154	9	8	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0007	3157	7	1	4	1	0	1	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0008	3156	6	6	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0009	3157	6	6	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0010	3156	2	2	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0011	3156	2	0	2	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	1/0	t0012	3154	1	0	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0013	3154	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0014	3156	1	0	0	1	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0015	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0016	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0017	3156	1	0	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0018	3157	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0019	3156	1	0	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0020	3156	1	0	0	0	0	1	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0021	3154	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0022	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0023	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0024	3156	1	0	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0025	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	t0026	3156	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557