JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HRH2_chr5_175653071_175715756	1/1	t0001	3396	135	24	27	59	8	15	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0002	3396	16	5	5	4	0	2	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0003	3400	15	6	0	7	0	2	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0004	3400	10	6	0	3	0	1	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0005	3401	8	4	0	4	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0006	3382	6	6	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0007	3396	5	0	0	5	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0008	3386	4	4	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0009	3399	3	2	1	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0010	3401	3	3	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0011	3399	3	0	0	3	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0012	3382	3	2	1	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0013	3396	3	0	0	3	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0014	3396	3	0	0	3	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0015	3385	2	2	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0016	3400	2	2	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0017	3386	2	2	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0018	3385	2	2	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0019	3386	2	2	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0020	3400	2	0	0	2	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0021	3396	2	0	0	0	0	2	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0022	3396	2	0	2	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0023	3382	2	0	2	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0024	3399	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0025	3387	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0026	3386	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0027	3400	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0028	3386	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0029	3401	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0030	3401	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0031	3387	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0032	3387	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0033	3386	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0034	3400	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0035	3400	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0036	3386	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0037	3386	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0038	3399	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0039	3399	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0040	3385	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0041	3396	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0042	3396	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0043	3382	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0044	3413	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0045	3382	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0046	3382	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0047	3396	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0048	3396	1	0	1	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0049	3396	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0050	3396	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756