JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HRH2_chr5_175653071_175715756	0/0	t0051	3396	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	t0052	3396	1	0	1	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH3_chr20_62209960_62225278	1/1	t0001	1355	352	81	71	140	16	42	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0002	1355	4	2	2	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0003	1355	3	3	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0004	1355	2	2	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0005	1355	1	1	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0006	1355	1	1	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0007	1355	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0008	1355	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0009	1355	1	0	1	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0010	1355	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	t0011	1355	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH4_chr18_24455637_24484961	1/1	t0001	2492	132	31	18	63	0	18	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0002	2492	69	1	5	58	1	4	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0003	2492	41	2	21	15	1	2	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0004	2492	36	15	9	0	4	8	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0005	2492	35	0	1	31	1	2	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0006	2492	27	0	2	20	0	5	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0007	2492	17	8	6	0	3	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0008	2492	13	12	1	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0009	2492	9	4	1	0	0	4	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0010	2492	9	1	5	0	2	1	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0011	2492	4	0	4	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0012	2491	3	1	0	2	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0013	2492	3	3	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0014	2492	3	3	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0015	2491	2	0	1	0	1	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0016	2492	2	2	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0017	2492	2	0	0	2	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0018	2492	1	0	1	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0019	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0020	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0021	2492	1	0	1	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0022	2492	1	0	0	0	0	1	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0023	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0024	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0025	2491	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0026	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0027	2492	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0028	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0029	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0030	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0031	2492	1	0	0	0	0	1	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0032	2492	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0033	2492	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	t0034	2492	1	0	0	0	1	0	copy fasta	HRH4	chr18	24455637	24484961
HRK_chr12_116851144_116886441	0/1	t0001	5512	62	2	16	32	2	9	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0002	5507	25	3	1	17	0	4	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0003	5505	19	9	2	7	0	1	copy fasta	HRK	chr12	116851144	116886441