JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HRK_chr12_116851144_116886441	0/0	t0004	5514	15	0	5	1	5	4	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0005	5509	11	0	0	11	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0006	5510	10	5	1	4	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0007	5503	8	5	1	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0008	5513	7	0	0	7	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0009	5509	7	2	0	4	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0010	5510	6	1	1	3	1	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0011	5506	5	0	3	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0012	5526	5	0	0	2	0	3	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0013	5527	5	0	0	5	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0014	5511	5	5	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0015	5511	5	3	2	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0016	5511	4	0	0	4	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0017	5510	4	0	0	4	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0018	5515	4	4	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0019	5509	4	0	0	4	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0020	5512	4	0	1	2	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0021	5518	3	2	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0022	5516	3	0	2	0	1	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0023	5528	3	0	0	2	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0024	5505	3	3	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0025	5509	3	0	0	3	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0026	5509	3	1	0	0	1	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0027	5515	3	3	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0028	5514	2	0	2	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0029	5508	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0030	5515	2	0	0	0	0	2	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0031	5511	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0032	5509	2	0	1	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0033	5508	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0034	5530	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0035	5510	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0036	5513	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0037	5508	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0038	5512	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0039	5511	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0040	5513	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0041	5500	2	1	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0042	5504	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0043	5506	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0044	5507	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0045	5507	2	0	0	2	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0046	5513	2	0	1	0	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0047	5516	2	2	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0048	5510	2	0	0	0	1	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	1/0	t0049	5514	2	0	0	0	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0050	5515	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0051	5510	1	0	0	0	1	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0052	5511	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0053	5503	1	0	0	0	0	1	copy fasta	HRK	chr12	116851144	116886441