Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKH_chr5_14699800_14876778	0/0	t0064	6722	1	0	1	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKIB1_chr7_92240974_92406383	0/0	t0001	3071	114	26	19	56	5	8	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0002	3071	71	4	8	52	0	7	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	1/0	t0003	3071	70	17	11	31	3	7	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/1	t0004	3072	11	0	3	5	0	2	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0005	3071	10	10	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0006	3071	7	2	1	4	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0007	3072	6	0	6	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0008	3071	4	0	0	4	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0009	3070	4	3	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0010	3071	3	3	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0011	3071	2	2	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0012	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0013	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0014	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0015	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0016	3070	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0017	3070	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0018	3071	1	0	1	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0019	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0020	3071	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0021	3071	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0022	3071	1	1	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	t0023	3070	1	0	1	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKK1_chr11_113382779_113405416	0/1	t0001	256	358	74	62	182	10	29	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	1/0	t0002	256	40	16	8	4	2	9	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	t0003	256	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	t0004	256	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKLE1_chr19_17276901_17292646	1/0	t0001	1115	61	1	13	40	1	5	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0002	1115	34	4	3	18	4	5	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0003	1111	31	3	4	21	1	2	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0004	1101	28	15	6	0	3	4	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0005	1109	28	4	5	15	2	2	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0006	1117	27	3	1	22	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0007	1113	26	5	5	12	1	3	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0008	1113	19	2	4	9	0	4	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0009	1113	13	1	0	10	2	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0010	1105	12	0	0	12	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0011	1111	12	11	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0012	1113	10	4	4	0	0	2	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0013	1117	8	8	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0014	1111	7	1	4	0	0	2	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0015	1107	6	0	6	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0016	1111	6	1	3	0	1	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0017	1119	5	0	0	5	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0018	1113	5	0	4	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0019	1111	5	0	4	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0020	1115	4	0	0	3	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0021	1115	4	2	0	2	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0022	1117	4	0	2	1	0	1	copy fasta	ANKLE1	chr19	17276901	17292646