JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HRK_chr12_116851144_116886441	0/0	t0104	5511	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0105	5498	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0106	5501	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0107	5503	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0108	5503	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0109	5505	1	0	0	0	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0110	5505	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0111	5505	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0112	5505	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0113	5506	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0114	5508	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0115	5507	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0116	5507	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0117	5508	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0118	5508	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0119	5508	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0120	5509	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0121	5511	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0122	5511	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0123	5512	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0124	5514	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0125	5514	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0126	5517	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0127	5520	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0128	5509	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0129	5506	1	0	0	0	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0130	5511	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0131	5513	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0132	5512	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0133	5512	1	0	1	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0134	5510	1	0	0	0	0	1	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	t0135	5514	1	0	0	1	0	0	copy fasta	HRK	chr12	116851144	116886441
HRNR_chr1_152207076_152229193	0/0	t0001	1077	199	53	35	73	14	24	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0002	1077	141	7	37	78	3	16	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0003	1077	21	0	1	17	0	3	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	1/0	t0004	1077	18	16	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0005	1077	11	7	0	4	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0006	1077	6	0	4	0	0	2	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0007	1077	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0008	1077	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0009	1077	2	0	0	2	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0010	1077	2	0	0	2	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0011	1077	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0012	1077	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0013	1077	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0014	1077	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/1	t0015	1077	1	0	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0016	1077	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0017	1077	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	t0018	1077	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193