JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HROB_chr17_44136930_44167476	0/0	t0001	758	152	47	23	69	4	9	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	1/1	t0002	758	127	16	25	62	6	16	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0003	758	16	10	5	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0004	758	7	6	1	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0005	758	6	1	0	5	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0006	756	3	0	0	3	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0007	758	3	0	0	3	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0008	758	2	0	2	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0009	758	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0010	758	1	0	1	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0011	758	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0012	758	1	0	0	0	0	1	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0013	758	1	0	1	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	t0014	756	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HRURF_chr8_22125458_22136010	0/1	t0001	449	226	81	34	74	7	29	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	1/0	t0002	449	171	14	46	86	6	18	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0003	449	5	0	2	0	3	0	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0004	449	1	1	0	0	0	0	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0005	449	1	1	0	0	0	0	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0006	449	1	1	0	0	0	0	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0007	449	1	1	0	0	0	0	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0008	473	1	0	0	0	0	1	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	t0009	497	1	1	0	0	0	0	copy fasta	HRURF	chr8	22125458	22136010
HR_chr8_22109419_22136010	1/0	t0001	1905	144	9	34	80	4	16	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0002	1905	104	22	15	49	1	17	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0003	1905	56	18	15	8	3	12	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0004	1905	20	0	0	20	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/1	t0005	1906	20	14	1	0	4	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0006	1906	13	1	10	0	2	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0007	1906	6	5	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0008	1905	5	5	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0009	1905	5	4	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0010	1906	4	0	1	0	3	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0011	1905	4	0	1	1	0	2	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0012	1906	3	3	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0013	1905	3	3	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0014	1905	3	1	1	0	1	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0015	1905	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0016	1905	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0017	1906	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0018	1905	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0019	1905	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0020	1905	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0021	1905	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0022	1905	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0023	1906	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0024	1906	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0025	1905	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0026	1905	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0027	1929	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010