JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HR_chr8_22109419_22136010	0/0	t0028	1953	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	t0029	1905	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HS1BP3_chr2_20612818_20656098	0/0	t0001	1205	142	19	32	70	6	15	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0002	1205	59	9	6	29	3	12	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0003	1205	55	36	4	10	1	4	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0004	1205	46	2	12	25	1	6	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0005	1205	44	0	12	28	3	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	1/0	t0006	1205	12	10	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0007	1205	9	5	4	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/1	t0008	1205	9	0	4	0	1	3	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0009	1205	4	0	4	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0010	1205	3	0	2	0	1	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0011	1205	2	2	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0012	1205	2	0	0	0	0	2	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0013	1205	2	2	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0014	1205	2	0	0	2	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0015	1205	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0016	1205	1	0	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0017	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0018	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0019	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0020	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0021	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0022	1205	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0023	1205	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0024	1205	1	0	0	1	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0025	1205	1	0	0	1	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0026	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	t0027	1205	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS2ST1_chr1_86909635_87114982	0/0	t0001	5683	35	10	10	4	3	8	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/1	t0002	5687	26	7	3	5	4	6	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0003	5687	12	11	0	0	0	1	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0004	5689	10	7	3	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0005	5687	7	4	0	0	1	2	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0006	5687	7	7	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0007	5687	6	6	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0008	5683	6	6	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0009	5687	6	2	2	0	0	2	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0010	5683	5	5	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0011	5687	5	4	1	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0012	5683	2	0	0	2	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0013	5683	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0014	5684	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0015	5684	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0016	5687	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0017	5687	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0018	5683	2	2	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0019	5689	2	0	0	2	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0020	5687	2	0	2	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0021	5683	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982