JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS2ST1_chr1_86909635_87114982	0/0	t0022	5683	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0023	5683	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0024	5683	1	0	0	1	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0025	5683	1	0	0	0	0	1	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0026	5683	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0027	5687	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	1/0	t0028	5689	1	0	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0029	5687	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0030	5687	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	t0031	5689	1	0	1	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS3ST1_chr4_11388150_11433894	0/0	t0001	6236	98	10	30	46	6	6	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0002	6236	62	3	11	39	2	7	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0003	6236	46	17	4	18	3	4	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/1	t0004	6236	33	0	2	18	3	9	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0005	6236	20	1	3	13	0	3	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0006	6237	17	1	2	12	0	2	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0007	6234	11	2	5	0	1	3	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0008	6235	10	3	2	3	1	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0009	6237	7	1	0	6	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0010	6237	6	1	0	4	1	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0011	6235	6	5	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0012	6236	6	0	6	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0013	6236	6	0	0	6	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0014	6236	5	5	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0015	6233	4	4	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0016	6236	4	0	0	4	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0017	6236	4	0	0	4	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0018	6236	4	0	0	4	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0019	6236	4	0	0	4	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0020	6236	4	4	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0021	6233	3	3	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0022	6235	3	1	1	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0023	6232	3	3	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0024	6237	3	2	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0025	6236	3	0	0	2	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0026	6235	3	1	1	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0027	6235	3	1	2	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0028	6236	3	3	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0029	6236	2	2	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0030	6237	2	0	2	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0031	6236	2	0	2	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0032	6236	2	0	0	2	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0033	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0034	6237	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	1/0	t0035	6237	1	0	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0036	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0037	6237	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0038	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0039	6236	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0040	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894