JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST1_chr4_11388150_11433894	0/0	t0041	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0042	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0043	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0044	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0045	6235	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0046	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0047	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0048	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0049	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0050	6236	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0051	6237	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0052	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0053	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0054	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0055	6235	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0056	6234	1	0	0	0	1	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0057	6238	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0058	6237	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0059	6231	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0060	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0061	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0062	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0063	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0064	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0065	6229	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0066	6235	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0067	6236	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0068	6238	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0069	6237	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0070	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0071	6236	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0072	6235	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0073	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0074	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0075	6238	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0076	6237	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0077	6236	1	0	1	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0078	6234	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0079	6229	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0080	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0081	6236	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0082	6236	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	t0083	6235	1	1	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST2_chr16_22809162_22921338	1/1	t0001	1226	251	51	41	116	10	31	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0002	1226	30	12	11	0	2	5	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0003	1226	18	16	2	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0004	1226	15	0	8	3	0	4	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0005	1226	9	1	8	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0006	1226	8	7	1	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0007	1227	6	1	0	4	0	1	copy fasta	HS3ST2	chr16	22809162	22921338