JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST2_chr16_22809162_22921338	0/0	t0008	1226	5	0	5	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0009	1226	2	0	0	2	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0010	1226	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0011	1226	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0012	1226	1	0	0	1	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0013	1226	1	0	0	0	0	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0014	1226	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	t0015	1226	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST3A1_chr17_13489032_13606929	0/0	t0001	2967	86	6	17	49	4	10	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0002	2965	31	0	5	25	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0003	2966	26	0	5	16	0	5	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0004	2967	14	6	5	3	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0005	2967	13	2	3	3	0	5	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/1	t0006	2966	13	3	5	0	2	2	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0007	2967	10	0	0	6	0	4	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0008	2965	9	2	1	3	2	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0009	2966	7	7	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0010	2966	6	3	2	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0011	2966	6	3	0	2	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0012	2966	6	0	0	6	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0013	2967	5	0	1	4	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0014	2965	4	0	0	1	2	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0015	2965	4	0	0	3	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0016	2967	4	1	2	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0017	2966	4	3	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0018	2966	4	4	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0019	2966	3	1	0	1	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0020	2966	3	0	0	2	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0021	2966	3	3	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0022	2965	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0023	2966	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0024	2966	2	1	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0025	2967	2	0	0	2	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0026	2966	2	1	0	0	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0027	2966	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0028	2966	2	0	1	0	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0029	2966	2	0	0	1	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0030	2966	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0031	2965	2	1	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0032	2965	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0033	2965	2	0	0	2	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0034	2966	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0035	2967	2	1	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0036	2967	2	2	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0037	2967	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0038	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0039	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0040	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0041	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0042	2965	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929