JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST3A1_chr17_13489032_13606929	0/0	t0043	2968	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0044	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0045	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0046	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0047	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0048	2965	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0049	2965	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0050	2968	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0051	2967	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0052	2966	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0053	2967	1	0	0	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0054	2967	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0055	2967	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0056	2967	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0057	2967	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0058	2967	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0059	2966	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0060	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0061	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0062	2966	1	0	0	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0063	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0064	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0065	2965	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0066	2965	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0067	2965	1	0	0	0	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0068	2965	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0069	2967	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0070	2966	1	0	0	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0071	2967	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0072	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0073	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0074	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0075	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0076	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0077	2965	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0078	2967	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0079	2967	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0080	2967	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0081	2967	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	1/0	t0082	2966	1	0	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	t0083	2966	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3B1_chr17_14296081_14354404	0/1	t0001	4199	85	0	19	50	2	13	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0002	4196	54	4	2	39	2	7	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0003	4199	37	1	5	25	2	4	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0004	4191	22	1	4	15	0	2	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0005	4196	12	2	4	5	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0006	4198	11	8	0	3	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0007	4191	10	0	0	7	0	3	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0008	4197	9	5	1	0	1	2	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0009	4198	9	1	2	4	0	2	copy fasta	HS3ST3B1	chr17	14296081	14354404