JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST3B1_chr17_14296081_14354404	0/0	t0060	4198	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0061	4200	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0062	4198	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0063	4196	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0064	4196	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0065	4198	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0066	4199	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0067	4199	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0068	4198	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0069	4198	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0070	4197	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0071	4196	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0072	4194	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0073	4196	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0074	4194	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0075	4195	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0076	4199	1	0	0	0	1	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0077	4196	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0078	4191	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0079	4196	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0080	4197	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	1/0	t0081	4197	1	0	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0082	4197	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0083	4198	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0084	4198	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0085	4199	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0086	4199	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0087	4199	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0088	4197	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0089	4198	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0090	4196	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0091	4196	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0092	4196	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0093	4196	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0094	4199	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0095	4199	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0096	4197	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0097	4197	1	0	1	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0098	4198	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0099	4199	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0100	4199	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0101	4199	1	0	0	0	0	1	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0102	4199	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0103	4199	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	t0104	4196	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST4_chr16_25686959_26142685	0/0	t0001	1894	44	3	14	12	5	10	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0002	1894	27	10	2	12	0	3	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0003	1897	19	14	4	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0004	1897	18	7	4	5	0	2	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0005	1894	6	2	2	0	2	0	copy fasta	HS3ST4	chr16	25686959	26142685