JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST4_chr16_25686959_26142685	0/0	t0006	1897	5	1	1	2	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0007	1897	3	3	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0008	1897	3	3	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0009	1897	2	0	0	0	0	2	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0010	1900	2	1	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0011	1912	2	0	0	2	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0012	1894	2	0	0	2	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0013	1894	2	0	2	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0014	1897	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0015	1897	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0016	1897	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0017	1912	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0018	1897	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0019	1897	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0020	1941	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0021	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0022	1894	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0023	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0024	1888	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0025	1888	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0026	1882	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0027	1882	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0028	1882	1	0	0	0	1	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0029	1894	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0030	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0031	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0032	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0033	1894	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0034	1909	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0035	1894	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0036	1909	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0037	1894	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0038	1909	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0039	1894	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0040	1873	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0041	1897	1	0	0	1	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	t0042	1897	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST5_chr6_114050596_114348023	0/0	t0001	2828	34	6	17	4	1	6	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0002	2829	33	9	10	6	1	7	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	1/1	t0003	2829	19	2	1	12	0	2	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0004	2829	17	5	3	6	1	2	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0005	2828	13	11	0	0	0	2	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0006	2828	12	0	5	5	2	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0007	2828	7	3	2	0	1	1	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0008	2827	6	0	2	2	1	1	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0009	2828	6	0	4	2	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0010	2827	4	2	2	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0011	2828	4	3	0	0	0	1	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0012	2828	4	4	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0013	2828	4	0	0	4	0	0	copy fasta	HS3ST5	chr6	114050596	114348023