Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKLE1_chr19_17276901_17292646	0/0	t0023	1107	4	1	0	3	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0024	1109	4	3	0	0	1	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0025	1096	3	2	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/1	t0026	1115	3	0	1	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0027	1113	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0028	837	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0029	1097	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0030	1109	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0031	1111	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0032	1115	2	1	0	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0033	1117	2	0	2	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0034	1092	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0035	1098	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0036	1102	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0037	1110	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0038	1107	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0039	1117	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0040	1117	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0041	1115	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0042	1115	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0043	1115	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0044	1103	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0045	1097	1	0	0	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0046	1101	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0047	1101	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0048	1113	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0049	1109	1	0	0	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0050	1117	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0051	1095	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0052	1107	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0053	1113	1	0	0	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0054	1113	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0055	1113	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	t0056	1107	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE2_chr12_132720503_132766832	1/1	t0001	1774	310	62	58	132	11	45	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0002	1774	10	8	2	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0003	1774	6	0	5	0	0	1	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0004	1774	4	4	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0005	1774	2	2	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0006	1774	2	0	1	0	1	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0007	1774	1	1	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0008	1774	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0009	1774	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0010	1787	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0011	1774	1	1	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0012	1786	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0013	1774	1	1	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0014	1773	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0015	1773	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0016	1795	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832