JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS3ST5_chr6_114050596_114348023	0/0	t0014	2828	3	3	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0015	2828	3	0	3	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0016	2828	3	3	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0017	2829	3	2	1	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0018	2827	2	0	0	2	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0019	2828	2	2	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0020	2828	2	2	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0021	2828	2	0	1	0	1	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0022	2828	2	2	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0023	2828	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0024	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0025	2829	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0026	2828	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0027	2827	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0028	2828	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0029	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0030	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0031	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0032	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0033	2827	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0034	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0035	2829	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0036	2828	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0037	2829	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0038	2828	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0039	2828	1	0	0	1	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0040	2829	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0041	2830	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0042	2827	1	1	0	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	t0043	2828	1	0	1	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST6_chr16_1906475_1923415	0/1	t0001	209	346	90	63	145	12	35	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	t0002	209	71	1	17	47	1	5	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	t0003	209	12	3	0	8	1	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	t0004	209	2	0	0	0	0	2	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	t0005	209	2	0	2	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS6ST1_chr2_128260480_128323868	1/1	t0001	2988	46	1	11	16	4	12	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0002	2988	36	0	11	23	0	2	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0003	2988	21	1	11	3	1	5	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0004	2988	18	0	2	14	0	2	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0005	2988	16	1	7	3	2	3	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0006	2988	12	0	2	8	0	2	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0007	2987	7	7	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0008	2988	5	4	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0009	2988	5	0	1	1	3	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0010	2988	5	0	1	4	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0011	2987	4	4	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0012	2988	4	3	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0013	2988	4	2	1	0	1	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0014	2987	4	4	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0015	2988	3	3	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868