JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS6ST1_chr2_128260480_128323868	0/0	t0066	2987	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0067	2988	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0068	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0069	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0070	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0071	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0072	2988	1	0	0	0	0	1	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0073	2988	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0074	2988	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0075	2988	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0076	2987	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0077	2987	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0078	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0079	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0080	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0081	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0082	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0083	2987	1	0	0	0	0	1	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0084	2987	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0085	2987	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0086	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0087	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0088	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0089	2987	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0090	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0091	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0092	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0093	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0094	2988	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0095	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	t0096	2988	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST2_chrX_132621015_132963629	0/0	t0001	2236	88	6	16	48	6	12	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0002	2236	80	33	7	29	1	10	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0003	2230	17	9	1	6	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0004	2230	10	0	2	0	4	4	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0005	2236	3	3	0	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0006	2236	1	1	0	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0007	2236	1	0	0	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	t0008	2237	1	0	1	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST3_chr13_96085107_96844562	0/0	t0001	7131	28	9	7	11	1	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0002	7121	22	10	1	7	3	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0003	7119	12	0	4	5	1	2	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0004	7125	7	0	1	6	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0005	7125	4	2	1	1	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0006	7125	3	2	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0007	7121	3	3	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0008	7130	3	3	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0009	7135	3	3	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0010	7129	2	0	0	2	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0011	7119	2	0	2	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562