JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HS6ST3_chr13_96085107_96844562	0/0	t0012	7131	2	2	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0013	7130	2	2	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0014	7121	1	0	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0015	7125	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0016	7129	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0017	7122	1	0	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0018	7125	1	0	0	1	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0019	7123	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0020	7129	1	0	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0021	7131	1	0	0	1	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0022	7133	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0023	7135	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0024	7135	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0025	7129	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0026	7130	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0027	7127	1	0	0	0	0	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0028	7137	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0029	7130	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0030	7132	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0031	7134	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0032	7133	1	0	0	0	0	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0033	7121	1	0	0	0	0	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0034	7131	1	0	0	0	1	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0035	7132	1	0	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	t0036	7121	1	0	1	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HSBP1L1_chr18_79959643_79975822	0/0	t0001	464	166	25	27	84	3	27	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0002	464	78	20	20	29	5	4	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/1	t0003	464	75	3	10	45	6	10	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0004	465	60	22	12	21	2	3	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	1/0	t0005	465	17	15	1	0	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0006	464	9	8	1	0	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0007	464	4	0	1	0	0	3	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0008	464	2	0	0	1	0	1	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	t0009	464	1	1	0	0	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1_chr16_83802978_83824737	0/0	t0001	8419	103	12	16	66	4	5	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0002	8419	46	3	7	29	0	7	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/1	t0003	8418	43	3	18	4	5	12	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0004	8420	36	1	0	31	0	4	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0005	8421	34	12	11	8	0	3	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0006	8420	18	3	11	0	3	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0007	8419	15	0	0	15	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0008	8419	8	0	0	8	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0009	8421	7	5	2	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0010	8419	6	4	1	0	1	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0011	8421	5	5	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0012	8419	5	0	0	5	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0013	8420	5	0	0	5	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0014	8420	5	0	1	0	1	3	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0015	8419	5	0	1	1	3	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0016	8420	5	5	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737