JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSBP1_chr16_83802978_83824737	0/0	t0017	8420	4	4	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0018	8419	4	0	0	4	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0019	8421	3	3	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0020	8421	3	3	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0021	8420	3	0	0	3	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0022	8419	3	0	0	3	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0023	8414	3	3	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0024	8420	3	0	0	3	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0025	8419	3	3	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0026	8421	2	0	0	2	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0027	8418	2	0	1	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0028	8421	2	1	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0029	8420	2	0	0	2	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0030	8420	2	0	1	0	1	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0031	8420	2	0	0	0	0	2	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0032	8420	2	2	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0033	8418	2	2	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0034	8418	2	2	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0035	8419	2	0	0	2	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0036	8420	2	0	0	2	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0037	8420	2	0	0	2	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0038	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0039	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0040	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0041	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0042	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0043	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0044	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0045	8418	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0046	8418	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0047	8421	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0048	8421	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0049	8421	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0050	8421	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0051	8421	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0052	8419	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0053	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0054	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0055	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0056	8420	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0057	8420	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0058	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0059	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0060	8421	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0061	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0062	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0063	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0064	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0065	8420	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0066	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737