JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSBP1_chr16_83802978_83824737	0/0	t0067	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0068	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0069	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0070	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0071	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0072	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	1/0	t0073	8419	1	0	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0074	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0075	8456	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0076	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0077	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0078	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0079	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0080	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0081	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0082	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0083	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0084	8419	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0085	8420	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0086	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0087	8418	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0088	8418	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0089	8418	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0090	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0091	8421	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0092	8421	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0093	8419	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0094	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0095	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0096	8419	1	0	0	0	0	1	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0097	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0098	8420	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0099	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0100	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0101	8420	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0102	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0103	8418	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0104	8419	1	0	0	1	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0105	8420	1	0	1	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	t0106	8421	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSCB_chr22_28737039_28762510	1/1	t0001	399	406	86	70	190	14	44	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	t0002	399	1	0	0	1	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	t0003	399	1	0	0	0	0	1	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	t0004	399	1	0	0	1	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	t0005	375	1	0	0	0	0	1	copy fasta	HSCB	chr22	28737039	28762510
HSD11B1L_chr19_5676027_5693522	1/1	t0001	837	371	86	79	146	14	44	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	t0002	837	5	1	3	1	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	t0003	837	2	1	1	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	t0004	837	1	0	0	0	0	1	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	t0005	837	1	0	1	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522