JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSD11B1L_chr19_5676027_5693522	0/0	t0006	837	1	0	0	1	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	t0007	837	1	0	0	0	0	1	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1_chr1_209699846_209739929	1/1	t0001	506	320	68	51	162	9	28	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B1_chr1_209699846_209739929	0/0	t0002	506	73	10	13	40	5	5	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B1_chr1_209699846_209739929	0/0	t0003	506	6	6	0	0	0	0	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B1_chr1_209699846_209739929	0/0	t0004	506	1	0	0	0	0	1	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B2_chr16_67426121_67442553	1/1	t0001	679	278	94	47	95	14	26	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0002	679	3	1	0	2	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0003	679	2	0	0	2	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0004	679	2	0	0	2	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0005	679	1	0	0	0	0	1	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0006	679	1	0	1	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0007	692	1	1	0	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0008	679	1	0	0	1	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	t0009	679	1	0	0	0	0	1	copy fasta	HSD11B2	chr16	67426121	67442553
HSD17B10_chrX_53426261_53439370	1/1	t0001	169	278	60	48	129	9	30	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	t0002	170	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	t0003	170	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B11_chr4_87331515_87396188	1/0	t0001	880	168	15	25	95	7	25	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/1	t0002	880	72	8	31	23	4	5	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0003	879	61	15	8	36	0	2	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0004	879	35	27	2	1	1	4	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0005	884	12	11	1	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0006	881	11	0	0	10	0	1	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0007	881	6	6	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0008	882	6	6	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0009	881	5	5	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0010	881	4	1	1	1	1	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0011	882	3	3	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0012	880	2	0	2	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0013	879	1	1	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0014	880	1	0	0	0	1	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0015	880	1	0	0	0	0	1	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0016	880	1	1	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	t0017	880	1	1	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B12_chr11_43675738_43861615	1/0	t0001	1458	152	45	27	46	9	24	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/1	t0002	1768	92	29	24	27	5	6	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0003	1458	26	6	3	12	2	3	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0004	1774	2	2	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0005	1768	1	1	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0006	1768	1	0	1	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0007	1768	1	0	1	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0008	1774	1	1	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0009	1774	1	1	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0010	1768	1	0	0	0	0	1	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0011	1458	1	1	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	t0012	1458	1	0	0	1	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B13_chr4_87298794_87327882	0/0	t0001	1470	118	11	20	70	9	8	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0002	1470	100	26	31	22	6	15	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	1/1	t0003	1466	79	1	16	48	0	12	copy fasta	HSD17B13	chr4	87298794	87327882