JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSD17B13_chr4_87298794_87327882	0/0	t0004	1470	63	0	1	59	1	2	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0005	1470	37	34	2	0	0	1	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0006	1470	12	7	2	0	2	1	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0007	1470	10	10	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0008	1466	7	0	2	5	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0009	1470	5	5	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0010	1470	2	0	0	0	0	2	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0011	1470	1	0	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0012	1470	1	0	0	1	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0013	1470	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0014	1466	1	0	0	1	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0015	1470	1	0	0	0	0	1	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0016	1470	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0017	1470	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0018	1470	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	t0019	1470	1	0	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B14_chr19_48808018_48841491	1/1	t0001	238	368	74	74	158	16	44	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	t0002	236	26	24	2	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B1_chr17_42547923_42560214	0/0	t0000	0	1	1	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	1/1	t0001	288	408	78	75	189	18	46	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	t0002	288	12	11	1	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	t0003	288	1	0	0	1	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B2_chr16_82030253_82103534	0/1	t0001	271	214	65	34	86	8	20	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	1/0	t0002	271	152	27	18	84	4	18	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B3_chr9_96230306_96307176	1/1	t0001	227	225	59	54	61	12	37	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	t0002	227	103	15	18	63	0	7	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	t0003	227	30	0	2	27	0	1	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	t0004	227	16	0	0	11	0	5	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B4_chr5_119447497_119547332	1/0	t0001	418	168	28	27	90	6	16	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/1	t0002	419	143	21	25	78	8	10	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0003	419	44	36	5	1	0	2	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0004	419	13	0	6	1	1	5	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0005	419	3	0	1	0	1	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0006	418	3	2	0	1	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0007	419	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0008	418	1	0	0	1	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0009	418	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0010	419	1	0	1	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0011	419	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	t0012	419	1	0	1	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B6_chr12_56758324_56792790	1/1	t0001	559	354	89	72	135	18	38	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	t0002	559	2	2	0	0	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	t0003	559	2	0	0	2	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	t0004	559	1	0	0	1	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	t0005	559	1	1	0	0	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B7_chr1_162785702_162817823	0/0	t0001	503	205	19	47	102	9	28	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/1	t0002	503	176	51	29	75	6	14	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	t0003	503	14	0	0	14	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	1/0	t0004	503	13	12	0	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	t0005	503	6	6	0	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823